PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g31777.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 367aa    MW: 43722 Da    PI: 9.5656
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g31777.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91.1e-2013105390
              FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       Y+ YA++ GF +r ++++ks+ +gei +   vC + g ++++kk+       +k r ++ ++rtgCka++++k++  + w vt++  e nH+l
  Bradi4g31777.1.p  13 YKMYARRYGFGIRYDYKRKSEVDGEISSVSIVCHRAGVQSTKKKDtwnpepVVKLRGRNITERTGCKARMMIKRR-PDGWLVTEFAYEYNHPL 104
                       9******************************************99999999899999******************.888*************9 PP

              FAR1  90 a 90 
                        
  Bradi4g31777.1.p 105 I 105
                       6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1813105IPR004330FAR1 DNA binding domain
PfamPF105512.2E-31183277IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVFDSLKAVE ERYKMYARRY GFGIRYDYKR KSEVDGEISS VSIVCHRAGV QSTKKKDTWN  60
PEPVVKLRGR NITERTGCKA RMMIKRRPDG WLVTEFAYEY NHPLIKKWSL TRYTVKNVAN  120
YRASIQMEHK YTDMEDTMDY FRKLQQQDKD FYYKYKLDEE FRVQNIFWVD GAARRAYKHY  180
NDCVSFDTTY MTNIYKMPFA PFIGINNHGQ SIQFGCGFLR NELTERFVWL FRTFLEAVDG  240
LVPINIITDQ DFAMRAGIDE VFPNTRHRNC RWHIMKKATE KLGSYLAGRK KLHAEFNDSV  300
NSSMTPDEFE EKWNTMVQKH RLEEHEDFIR LYHKRSCCVP AYFMQSFYPF LQSTARNEGF  360
NAVLKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239385.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3K7S71e-141A0A0Q3K7S7_BRADI; Uncharacterized protein
STRINGBRADI4G31780.11e-126(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-69FAR1-related sequence 5